1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagcaagcagtctgtataacacgtgcagacccacgtgcacgcttggtaccctgtgctgacacccggcccaaaccccaccaccgtgtccgcacccttgcagGCCTTCTCCCGCCCCGGCTCCTCCTTCACCCCCACCCAGCGCACGCTGGAGATCAACCCCCGCCACCCGCTCATCGTGGCGCTCAAGGACAAGCTGGCCG
species | Chlamydomonas reinhardtii |
transcript | EDP06860 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCGGCAAGTACGGCAACAGCGCCAACATGGAGCGCATCATGCGCGCACAG GCCTTCTCCCGCCCCGGCTCCTCCTTCACCCCCACCCAGCGCACGCTGGAG
genomic: CCGGCAAGTACGGCAACAGCGCCAACATGGAGCGCATCATGCGCGCACAGgtcagagggg ... acccttgcagGCCTTCTCCCGCCCCGGCTCCTCCTTCACCCCCACCCAGCGCACGCTGGAG
gtaccctgtgctgacacccggcccaaaccccaccaccgtgtccgcacccttgcagGCCTTCTCCCGCCCCGGCTCCTCCTTCACCCCCACCCAGCGCACGCTGGAGATCAACCCCCGCCACCCGCTCATCGTGGCGCTCAAGGACAAGCTGGCCG
tgctgac putative branch site (score: 2)
caccctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcaagcagtctgtataacacgtgcagacccacgtgcacgcttggtaccctgtgctgacacccggcccaaaccccaccaccgtgtccgcacccttgcagGCCTTCTCCCGCCCCGGCTCCTCCTTCACCCCCACCCAGCGCACGCTGGAGATCAACCCCCGCCACCCGCTCATCGTGGCGCTCAAGGACAAGCTGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- gcaagca
- - - - - tctgtat
- - - - - - - - - - acgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - ctgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcccaaa