1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcggccaaagggaaggggcggtatgctgcaggggccaggttcgctacgtttgctaagcgactcaggttgttaacaagtggtgacggcatgcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCCGCCACCATCAACCGGTCAAAGCTGGAGCGCGAGGAGCTGCTCAAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04678 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGGCATGCAGGGCCTCACGGACGCCGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCCEST: gi|161819991|gb|FC107532.1|FC107532
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCCEST: gi|161790532|gb|FC080015.1|FC080015
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCCEST: gi|14233757|gb|BG852573.1|BG852573
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: AGA-GGGCATGCAGGGCCTCACG-ACGCNGACGTTAGCCGCATGATCGCC GAGGCGGACGTGAACGGCGACGGCACA-TCGACTACGCAGAAGTTC-TGGCEST: gi|10772506|gb|AV623329.1|AV623329
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACG-AGGAGTTCCTGGC
EST: AGAAGGGCATGCAGGGCCTGACGGACGCGGACGTCAGCCGCATGATCGCG GAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCCEST: gi|14226566|gb|BG845398.1|BG845398
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGEST: gi|161800857|gb|FC084103.1|FC084103
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAG
EST: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGGTCCTGGCCEST: gi|161794416|gb|FC081889.1|FC081889
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
tacgtttgctaagcgactcaggttgttaacaagtggtgacggcatgcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCCGCCACCATCAACCGGTCAAAGCTGGAGCGCGAGGAGCTGCTCAAGCAG
tgttaac putative branch site (score: 2)
ttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcggccaaagggaaggggcggtatgctgcaggggccaggttcgctacgtttgctaagcgactcaggttgttaacaagtggtgacggcatgcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCCGCCACCATCAACCGGTCAAAGCTGGAGCGCGAGGAGCTGCTCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - gtttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtt