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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgagccaccacgcgcaagccagtttcactctgttgtgctgctgccagcaggaaatgatgcctctgccaatcttcacgcgcctgatgcgatgctgcgggtgctgttaattgatggctggatcacgtatcatacgggcaacacatgcacgcctcatcgccaccccatcccaccccatgcagGGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP02967
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701415|gb|BI725720.1|BI725720
EST:     GTGCCCCCCAAACCGAGAACCGCCGCTGCCAGTCACTCTTCAA                         GGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTA
genomic: GTGCCCCCCAAACCGAGAACCGCCGCTGCCAGTCACTCTTCAAgtaagtgagc ... ccccatgcagGGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTA
EST: gi|161791763|gb|FC078346.1|FC078346
EST:     GTGCCCCCCAAACCGAGAACCGCCGCTGCCAGTCACTCTTCAA                         GGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTA
genomic: GTGCCCCCCAAACCGAGAACCGCCGCTGCCAGTCACTCTTCAAgtaagtgagc ... ccccatgcagGGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatacgggcaacacatgcacgcctcatcgccaccccatcccaccccatgcagGGACGAGTGCACTCCTGCAAACGGCTGTGTCTGGAACATGGTGTCCTACTACG
                                   ccccatcccacccc  CT-rich tract