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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgactctgctaccctccccatggacttcatagaatgtaatttattcactccgttctccatgaacggcaacccccccccccccccaccttcgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGCGCCCCCCACCACAACAACCACCACGAGGGCTTCATGAACTTCATGCACC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22076143|gb|BQ824919.1|BQ824919
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|15369143|gb|BI528569.1|BI528569
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|49463307|gb|BP091220.1|BP091220
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAA
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAA
EST: gi|22076228|gb|BQ825004.1|BQ825004
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|6546842|gb|AV392626.1|AV392626
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|161817937|gb|FC103632.1|FC103632
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|10127159|gb|BE725863.1|BE725863
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGC
EST: gi|14230365|gb|BG849181.1|BG849181
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTAACCTACTGCTGCCGGTGAACGCGCCGCG
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACT-ACCTACTGCTGCCGGTGAACGCGCCGCG
EST: gi|15373362|gb|BI532788.1|BI532788
EST:     GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG                         CGGCACCGGCTGGGCCCCAACTACCTACTGCTGGCCGGTGAACGCGCCGNG
genomic: GCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAGgtagctgcgc ... cgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTG-CCGGTGAACGCGCCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactccgttctccatgaacggcaacccccccccccccccaccttcgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGCGCCCCCCACCACAACAACCACCACGAGGGCTTCATGAACTTCATGCACC
                         ccccccccccccccca  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgactctgctaccctccccatggacttcatagaatgtaatttattcactccgttctccatgaacggcaacccccccccccccccaccttcgcctcacagCGGCACCGGCTGGGCCCCAACTACCTACTGCTGCCGGTGAACGCGCCGCGCGCCCCCCACCACAACAACCACCACGAGGGCTTCATGAACTTCATGCACC

- - - - - - - - - -catggac
- - - - - - - - - - - - - -tcataga
- - - - - - - - - - - - - - - - - -tgtaatt
- - - - - - - - - - - - - - - - - - - - - -attcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaac