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...atctcagtggctggttcgtccatgttgaggtgcaggtggctggctcgagcacccgttaaacttccctgtgtgcaacccgctattatcacctaccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGCCAAGACCGGCAAGCCCATCAACTACGACATCGAGGACAAGATCAACTT
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|6542592|gb|AV388376.1|AV388376
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|10771707|gb|AV622530.1|AV622530
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|14229691|gb|BG848507.1|BG848507
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|161796862|gb|FC083218.1|FC083218
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACCCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|16072819|gb|BI874815.1|BI874815
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|10773200|gb|AV624023.1|AV624023
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|10771619|gb|AV622442.1|AV622442
genomic: CCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|14229690|gb|BG848506.1|BG848506
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|23363125|gb|BU650945.1|BU650945
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|6542099|gb|AV387883.1|AV387883
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGEST: gi|161817251|gb|FC104090.1|FC104090
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: CTTCGGCTTCGCGGACGTGGTCACCACCACCACCCACAAGTCCCTGCGCG GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
cgagcacccgttaaacttccctgtgtgcaacccgctattatcacctaccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGCCAAGACCGGCAAGCCCATCAACTACGACATCGAGGACAAGATCAACTT
ttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcagtggctggttcgtccatgttgaggtgcaggtggctggctcgagcacccgttaaacttccctgtgtgcaacccgctattatcacctaccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACGCCAAGACCGGCAAGCCCATCAACTACGACATCGAGGACAAGATCAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - gcacccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaccc