1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...catgaacattgtctcgaggttgcttgtccattgcccactaagcccacgcccgtctctcacgttcaattatgcgccccggcctgtcccgcttcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO96110 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAA GGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTEST: gi|22061099|gb|BQ814081.1|BQ814081
genomic: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAAgtgagcgaga ... tcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGT
EST: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAA GGGCTANATGGAGTACATCAACGGACTGCCGGCTGATCTCGCANCCCGGAGEST: gi|16437402|gb|BM002622.1|BM002622
genomic: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAAgtgagcgaga ... tcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCG-CTGATCTCGCAGCCCG-AG
EST: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAA GGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTEST: gi|16438283|gb|BM003503.1|BM003503
genomic: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAAgtgagcgaga ... tcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGT
EST: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAA GGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGT
genomic: CGCTTCTCCACCTCCGGCACCTACTACCCGCCCGCCTACACCAGCTACAAgtgagcgaga ... tcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGT
acgcccgtctctcacgttcaattatgcgccccggcctgtcccgcttcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG
ctctcac putative branch site (score: 3)
tcccgcttc putative PPT
ttcaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgaacattgtctcgaggttgcttgtccattgcccactaagcccacgcccgtctctcacgttcaattatgcgccccggcctgtcccgcttcgcgcgcagGGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-atgaaca
- - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - -tgcccac
- - - - - - - - - - - - - - - - - - - -aagccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgttca