1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgttctgggtcgggcgctcggaggctagcgagctcgacacgccatctgttttccttgggcgaacgttccttccacgtgtcctcctttctgtcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCATGGAGATTATTGACCGGCGCGTCACCAAGATGAAGATGATCTCCCCCT
species | Chlamydomonas reinhardtii |
transcript | EDP09986 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|14233276|gb|BG852092.1|BG852092
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|15370253|gb|BI529679.1|BI529679
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|23363853|gb|BU651673.1|BU651673
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|10790271|gb|AV627637.1|AV627637
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|14240730|gb|BG859546.1|BG859546
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|14225055|gb|BG843871.1|BG843871
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|15370074|gb|BI529500.1|BI529500
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: GGGTGGTGNTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGATGAGGAGTTCGACCTGCCCEST: gi|14234329|gb|BG853145.1|BG853145
genomic: GGGTGGTG-TGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|49467461|gb|BP095374.1|BP095374
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|16073282|gb|BI875278.1|BI875278
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCEST: gi|10772753|gb|AV623576.1|AV623576
genomic: AGGGTGGTGTGGAGACCTTCCTGCTGGAGCGCAAGCTGGACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
EST: ACAACTGCAAG CCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
genomic: ACAACTGCAAGgtgcgcatga ... tcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCC
ctgttttccttgggcgaacgttccttccacgtgtcctcctttctgtcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCATGGAGATTATTGACCGGCGCGTCACCAAGATGAAGATGATCTCCCCCT
ttccttccacgtgtcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttctgggtcgggcgctcggaggctagcgagctcgacacgccatctgttttccttgggcgaacgttccttccacgtgtcctcctttctgtcgctcgcagCCCTGCGGTGGTGCCATCCCTCTGTGCATGGTTGAGGAGTTCGACCTGCCCATGGAGATTATTGACCGGCGCGTCACCAAGATGAAGATGATCTCCCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - acacgcc
- - - - - - - - - - - - - - - - - - - - - - tctgttt