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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatgatgagaatgtcacgtacgcagacgtgcaacatccatgccctgtaacacaaccttggggctggccccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09808
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161823345|gb|FC110126.1|FC110126
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161793546|gb|FC078458.1|FC078458
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|15370152|gb|BI529578.1|BI529578
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|23359832|gb|BU647652.1|BU647652
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|8828370|gb|BE212100.1|BE212100
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161810721|gb|FC098499.1|FC098499
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161802886|gb|FC089915.1|FC089915
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161820091|gb|FC105812.1|FC105812
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10776403|gb|AV633083.1|AV633083
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACT
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACT
EST: gi|161795098|gb|FC078242.1|FC078242
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161793129|gb|FC078093.1|FC078093
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|6548891|gb|AV394675.1|AV394675
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161794129|gb|FC080484.1|FC080484
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|22075855|gb|BQ824631.1|BQ824631
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10785736|gb|AV642408.1|AV642408
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161806672|gb|FC093925.1|FC093925
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|22058161|gb|BQ812878.1|BQ812878
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|15368370|gb|BI527796.1|BI527796
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|7593273|gb|AW707412.1|AW707412
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCNCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10784926|gb|AV641598.1|AV641598
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161791798|gb|FC078667.1|FC078667
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161797244|gb|FC087175.1|FC087175
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|14242488|gb|BG861304.1|BG861304
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161793662|gb|FC080160.1|FC080160
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10776430|gb|AV633110.1|AV633110
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161817952|gb|FC100241.1|FC100241
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|6545139|gb|AV390923.1|AV390923
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|15371106|gb|BI530532.1|BI530532
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10125887|gb|BE724591.1|BE724591
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10786352|gb|AV643024.1|AV643024
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAANCAANCCCAGCCTGGT
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAGCCTGGT
EST: gi|6544504|gb|AV390288.1|AV390288
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161791563|gb|FC078939.1|FC078939
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161820598|gb|FC111064.1|FC111064
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|34986850|gb|CF560767.1|CF560767
EST:     CTCTGAAATCAATGTCCGTCGTCATCACGGACACTGGCGAGCTGGACCCG                         GTCAAGAAGTACCACCCCCAGTACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|14225929|gb|BG844745.1|BG844745
EST:     CTGAAAT-AATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161815067|gb|FC104029.1|FC104029
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161791752|gb|FC078647.1|FC078647
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161790270|gb|FC077049.1|FC077049
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|10788648|gb|AV626368.1|AV626368
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|23362442|gb|BU650262.1|BU650262
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|239840661|gb|GR282351.1|GR282351
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161790482|gb|FC079172.1|FC079172
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|9210575|gb|BE337490.1|BE337490
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161793902|gb|FC079308.1|FC079308
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161806490|gb|FC089856.1|FC089856
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|16071413|gb|BI873409.1|BI873409
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161806605|gb|FC093091.1|FC093091
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|23360703|gb|BU648523.1|BU648523
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|34986851|gb|CF560768.1|CF560768
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|161797718|gb|FC083736.1|FC083736
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|14237712|gb|BG856528.1|BG856528
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
EST: gi|22066670|gb|BQ817063.1|BQ817063
EST:     CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTG                         GTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
genomic: CTCTGAAATCAATGTCCGTCGTCGTCGCGGACACTGGCGAGCTGGACCTGgtgagcatga ... cccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagacgtgcaacatccatgccctgtaacacaaccttggggctggccccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG
                     ctgtaac  putative branch site (score: 3)
                                            ccccgcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcatgatgagaatgtcacgtacgcagacgtgcaacatccatgccctgtaacacaaccttggggctggccccgccacagGTCAAGAAGTACCACCCCCAGGACTGCACAACCAACCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT