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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttagcaaatacgcctgctttggtcggcggcggcggtgttgctgacggccaatgtctgtcgcgcgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGCTGAACATCGCCGTCGGCGAGTCCGGTGACCGCCTGCAGAAGGCCGCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09751
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072247|gb|BQ821585.1|BQ821585
EST:     GCAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|16072582|gb|BI874578.1|BI874578
EST:     GCAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161821790|gb|FC107901.1|FC107901
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCGGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|7616321|gb|AW721761.1|AW721761
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49460543|gb|BP088456.1|BP088456
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|7593281|gb|AW707420.1|AW707420
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|7545770|gb|AW676258.1|AW676258
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161795957|gb|FC082520.1|FC082520
EST:     CAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|7546067|gb|AW676555.1|AW676555
EST:     GGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161797070|gb|FC086806.1|FC086806
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|34990121|gb|CF564038.1|CF564038
EST:     AGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49460265|gb|BP088178.1|BP088178
EST:     GCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|34990120|gb|CF564037.1|CF564037
EST:     AGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|22073416|gb|BQ822754.1|BQ822754
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|10778824|gb|AV635504.1|AV635504
EST:     AGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6547782|gb|AV393566.1|AV393566
EST:     GGCAGCAAAAATG                         GCCGAGCGCAAGACCANGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|8932558|gb|BE227319.1|BE227319
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|34994364|gb|CF568281.1|CF568281
EST:     AGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|22072934|gb|BQ822288.1|BQ822288
EST:     AGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161820619|gb|FC106132.1|FC106132
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49466671|gb|BP094584.1|BP094584
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|10794462|gb|AV631828.1|AV631828
EST:     AGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6549437|gb|AV395221.1|AV395221
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6550744|gb|AV396528.1|AV396528
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGA-CA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|22073415|gb|BQ822753.1|BQ822753
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6545312|gb|AV391096.1|AV391096
EST:     AAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|34991397|gb|CF565314.1|CF565314
EST:     AGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161797071|gb|FC086807.1|FC086807
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|22064565|gb|BQ815868.1|BQ815868
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49469754|gb|BP097615.1|BP097615
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161804657|gb|FC088413.1|FC088413
EST:     GGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|22066602|gb|BQ817028.1|BQ817028
EST:     AGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6549061|gb|AV394845.1|AV394845
EST:     CAGCAAAAATG                         GCCGAGCGCAAGACCA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161810346|gb|FC098228.1|FC098228
EST:     CAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|10789237|gb|AV644966.1|AV644966
EST:     GGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|6548039|gb|AV393823.1|AV393823
EST:     GAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGTGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49465097|gb|BP093010.1|BP093010
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|161821843|gb|FC107902.1|FC107902
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|10778555|gb|AV635235.1|AV635235
EST:     GCAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|10793800|gb|AV631166.1|AV631166
EST:     CAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|23364202|gb|BU652022.1|BU652022
EST:     AAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: gi|49465023|gb|BP092936.1|BP092936
EST:     GCAAGAAGGCAGCAAAAATG                         GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtcggcggcggcggtgttgctgacggccaatgtctgtcgcgcgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGCTGAACATCGCCGTCGGCGAGTCCGGTGACCGCCTGCAGAAGGCCGCCA
                     tgctgac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgttagcaaatacgcctgctttggtcggcggcggcggtgttgctgacggccaatgtctgtcgcgcgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGCTGAACATCGCCGTCGGCGAGTCCGGTGACCGCCTGCAGAAGGCCGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG