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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcgggctggtcggtgttgcagaggcatcgttctcaatccgtatgacctgcctaacgtggctccaatcaaaccgacctttcacctgggcgacttggcgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09734
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8932818|gb|BE227579.1|BE227579
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: gi|15370392|gb|BI529818.1|BI529818
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: gi|9027815|gb|BE237855.1|BE237855
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: gi|22063169|gb|BQ815100.1|BQ815100
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: gi|8932816|gb|BE227577.1|BE227577
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: gi|8287304|gb|BE024863.1|BE024863
EST:     CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG                         CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacgtggctccaatcaaaccgacctttcacctgggcgacttggcgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG
 gcctaac  putative branch site (score: 2)
             aatcaaa  TA-rich tract