1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggctccgggcgctccagcgcgacttgcgcgtccaaccggcacaacagccagcgacaacaatttgccctctgcgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTGAAGCACAAGCTGCTGGGCATGGGCGAGGTGGTCGACGCAAACCGCATG
species | Chlamydomonas reinhardtii |
transcript | EDP09725 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|22062466|gb|BQ814823.1|BQ814823
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGTGTEST: gi|15698430|gb|BI722735.1|BI722735
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|15698722|gb|BI723027.1|BI723027
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|23365543|gb|BU653363.1|BU653363
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|161807694|gb|FC096428.1|FC096428
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|10792448|gb|AV629814.1|AV629814
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|16438423|gb|BM003643.1|BM003643
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTEST: gi|23361748|gb|BU649568.1|BU649568
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
cgcgtccaaccggcacaacagccagcgacaacaatttgccctctgcgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTGAAGCACAAGCTGCTGGGCATGGGCGAGGTGGTCGACGCAAACCGCATG
ccctctgc CT-rich tract
aacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggctccgggcgctccagcgcgacttgcgcgtccaaccggcacaacagccagcgacaacaatttgccctctgcgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTGAAGCACAAGCTGCTGGGCATGGGCGAGGTGGTCGACGCAAACCGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT