1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacgaccacgcggcgtggctacggcgtgcccccgcttgtcgggctgtcccttcacttttaatccgcatccttacaaccactcgcgcggcctgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGGCGCCACCGTGTCCTCGCCCGTGCACATTGACTTTACCGTGTCGGGCCT
species | Chlamydomonas reinhardtii |
transcript | EDP09663 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|10768717|gb|AV619542.1|AV619542
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|15704210|gb|BI728531.1|BI728531
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|9460795|gb|BE453414.1|BE453414
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|10780987|gb|AV637667.1|AV637667
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GTCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|49462133|gb|BP090046.1|BP090046
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|10772791|gb|AV623614.1|AV623614
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|14238766|gb|BG857582.1|BG857582
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|23361770|gb|BU649590.1|BU649590
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|7413175|gb|AW651929.1|AW651929
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|16436780|gb|BM002000.1|BM002000
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGEST: gi|14231358|gb|BG850174.1|BG850174
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: ATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCCGCGG GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAAC
genomic: ATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGT-CCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAAC
gtcccttcacttttaatccgcatccttacaaccactcgcgcggcctgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGGCGCCACCGTGTCCTCGCCCGTGCACATTGACTTTACCGTGTCGGGCCT
acttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgaccacgcggcgtggctacggcgtgcccccgcttgtcgggctgtcccttcacttttaatccgcatccttacaaccactcgcgcggcctgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACGGCGCCACCGTGTCCTCGCCCGTGCACATTGACTTTACCGTGTCGGGCCT
-acgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca