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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcctaagctcgctgaagcagaggtgttgcctggaattatgggaaggattcaggagatctaggctttgggcgacggggcggttcatcggcaagcatcctcctacgcagctggcccaaattgcgttagctgagtgataaccctcctgaggactatttgcggatgtctgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCATCAGCCGCGACCGCAAGGAGTTCCTGGGCAACGCGCAGAACGACATTTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09633
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364803|gb|BU652623.1|BU652623
EST:     TCTGCCGATGCGTTGCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15373523|gb|BI532949.1|BI532949
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15700147|gb|BI724452.1|BI724452
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|22049389|gb|BQ808778.1|BQ808778
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15701023|gb|BI725328.1|BI725328
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|6552047|gb|AV397831.1|AV397831
EST:     TCTGCCGATGCGTTGCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161811720|gb|FC097457.1|FC097457
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15692835|gb|BI717140.1|BI717140
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161800507|gb|FC085521.1|FC085521
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|34981952|gb|CF555869.1|CF555869
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15370610|gb|BI530036.1|BI530036
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15701024|gb|BI725329.1|BI725329
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161821605|gb|FC108119.1|FC108119
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|14238973|gb|BG857789.1|BG857789
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15703983|gb|BI728288.1|BI728288
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|8514067|gb|BE121962.1|BE121962
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15701022|gb|BI725327.1|BI725327
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|10126065|gb|BE724769.1|BE724769
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|22049390|gb|BQ808779.1|BQ808779
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161821845|gb|FC107904.1|FC107904
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161818628|gb|FC103933.1|FC103933
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|34991242|gb|CF565159.1|CF565159
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|6544240|gb|AV390024.1|AV390024
EST:     TCTGCCGATGCGTTGCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTG
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTG
EST: gi|161823610|gb|FC108532.1|FC108532
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|8576730|gb|BE129367.1|BE129367
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|10771768|gb|AV622591.1|AV622591
EST:     TCTGCCGATGCGTTGCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161794806|gb|FC081083.1|FC081083
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161792704|gb|FC080671.1|FC080671
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|34993020|gb|CF566937.1|CF566937
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|8576652|gb|BE129289.1|BE129289
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|10127434|gb|BE726138.1|BE726138
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|14224932|gb|BG843748.1|BG843748
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15691941|gb|BI716246.1|BI716246
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161813669|gb|FC101734.1|FC101734
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|161815795|gb|FC103197.1|FC103197
EST:     CTGCCGATGCGTTGCGCTCGTT-TTACCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCTGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: CTGCCGATGCGTTTCGCTCGTTCTT-CCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15692487|gb|BI716792.1|BI716792
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|22069727|gb|BQ819249.1|BQ819249
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|14234656|gb|BG853472.1|BG853472
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|22063292|gb|BQ815152.1|BQ815152
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|15691905|gb|BI716210.1|BI716210
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|49460470|gb|BP088383.1|BP088383
EST:     TCTGCCGATGCGTTGCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCACAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|10126612|gb|BE725332.1|BE725332
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|14238166|gb|BG856982.1|BG856982
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|8286910|gb|BE024469.1|BE024469
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|34983280|gb|CF557197.1|CF557197
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|14237931|gb|BG856747.1|BG856747
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
EST: gi|34989464|gb|CF563381.1|CF563381
EST:     TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGG                         GGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA
genomic: TCTGCCGATGCGTTTCGCTCGTTCTTCCGTGCGCGTGAACAACAACTCGGgtgcgcctaa ... tgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgttagctgagtgataaccctcctgaggactatttgcggatgtctgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCATCAGCCGCGACCGCAAGGAGTTCCTGGGCAACGCGCAGAACGACATTTT
            tgataac  putative branch site (score: 2)
                             actattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcctaagctcgctgaagcagaggtgttgcctggaattatgggaaggattcaggagatctaggctttgggcgacggggcggttcatcggcaagcatcctcctacgcagctggcccaaattgcgttagctgagtgataaccctcctgaggactatttgcggatgtctgtcgagcagGGAAGATCTGGGGCGCCGAGGAGGAGAACGCTGCGCAAGTGCGTCGACTCATCAGCCGCGACCGCAAGGAGTTCCTGGGCAACGCGCAGAACGACATTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG