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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatgcaggcgcggcggagggcgcggctatgctcgttcacgcaggggcggggcgctagccctaagggggcaggacgtgccaaacacacgcgcctctgccacgcccacgccgagccaacacccctcccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGCACATGCGGCGGCAGAAACGCAGGTCGCCATCAAAGACGCCCTCGCTCAT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09572
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15370386|gb|BI529812.1|BI529812
EST:     ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGACGCTACC                         GGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCAG
genomic: ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACCgtgagtcatg ... cccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTC-G
EST: gi|22069920|gb|BQ819397.1|BQ819397
EST:     ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACC                         GGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC
genomic: ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACCgtgagtcatg ... cccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC
EST: gi|23363220|gb|BU651040.1|BU651040
EST:     ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACC                         GGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC
genomic: ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACCgtgagtcatg ... cccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC
EST: gi|23360683|gb|BU648503.1|BU648503
EST:     ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACC                         GGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC
genomic: ACCACCGTATACGCGGACGCCGAGCCTCCGCTCGACGAGGCGTCGCTACCgtgagtcatg ... cccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacacacgcgcctctgccacgcccacgccgagccaacacccctcccctcgcagGGCTCTGCACCAGGAGCTCCAATGGCAGCGAAACGATGTGCGCATCTTCGCACATGCGGCGGCAGAAACGCAGGTCGCCATCAAAGACGCCCTCGCTCAT
                                      cacccctcccctcgc  CT-rich tract