1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgagcgcagaggcacgaaacagtggcaaaaacgagcgagttagtccttttacttcagatcaaatttaatttaagccttgctccctgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCGTCATTCGCCACAGCCAGGCTGGTGGCGATGTTCGCGGTAGCAAGATGG
species | Chlamydomonas reinhardtii |
transcript | EDP09489 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGTGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGCGCAGCCGCCCCGTCGCTGCTCCEST: gi|8514524|gb|BE122419.1|BE122419
genomic: GCTCTTTGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: CCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCEST: gi|161817538|gb|FC099931.1|FC099931
genomic: CCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: CCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGCGCAGCCGCCCCGTCGCTGCTCCEST: gi|16433892|gb|BI999118.1|BI999118
genomic: CCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: CAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCEST: gi|10775794|gb|AV632474.1|AV632474
genomic: CAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: ATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCEST: gi|10791272|gb|AV628638.1|AV628638
genomic: ATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: GCTCTTTGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCEST: gi|161802865|gb|FC090219.1|FC090219
genomic: GCTCTTTGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: TGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGCGCAGCCGCCCCGTCGCTGCTCCEST: gi|15373589|gb|BI533015.1|BI533015
genomic: TGAAGCATACAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: CAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCEST: gi|161821508|gb|FC109803.1|FC109803
genomic: CAAAAATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
EST: ATGAATTCCTCGGTGCTTAGTGTGCGCCAG GTGGGGCGCCAGGCACGCCCTTTCACCGCGCAGCCGCCCCGTCGCTGCTCC
genomic: ATGAATTCCTCGGTGCTTAGTGTGCGCCAGgtgcgagcgc ... tgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCC
ttagtccttttacttcagatcaaatttaatttaagccttgctccctgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCGTCATTCGCCACAGCCAGGCTGGTGGCGATGTTCGCGGTAGCAAGATGG
atttaat putative branch site (score: 4)
ccttgctccct putative PPT
ttttacttcagatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgagcgcagaggcacgaaacagtggcaaaaacgagcgagttagtccttttacttcagatcaaatttaatttaagccttgctccctgaattgcagGTGGGGCGCCAGGCACGCCCTTTCACCGTGCAGCCGCCCCGTCGCTGCTCCGTCATTCGCCACAGCCAGGCTGGTGGCGATGTTCGCGGTAGCAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG