1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acaaggtgtcctctcccttagcgccagacgtcactccaaaccggcggtgaacccatccacacgcatccatagtgtatgtgttatattgtcaacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCAACCTGGCTCGTTCGCGTGTGGTGCACGACGGCGCTGACCTGATCGACG
species | Chlamydomonas reinhardtii |
transcript | EDP09415 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAG GCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCEST: gi|23365905|gb|BU653725.1|BU653725
genomic: AGTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAGgtgagactgg ... aacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTC
EST: AGTTCCGGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAG GCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCEST: gi|8576673|gb|BE129310.1|BE129310
genomic: AGTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAGgtgagactgg ... aacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTC
EST: AGTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAG GCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCEST: gi|15372857|gb|BI532283.1|BI532283
genomic: AGTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTTGGTGGGCCGCAGgtgagactgg ... aacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTC
EST: GTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGTNTGGTGGGCCGCAG GCCCAGCTAGGGCCCGGCCTGCAGCCACNTGGAAGAGGCCAAGCTGCCGGT
genomic: GTTCCAGGACTTTGCCCCAACATCTAGAAAGCATGT-TGGTGGGCCGCAGgtgagactgg ... aacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCAC-TGGAAGAGGCCAAGCTGCCGGT
ggtgaacccatccacacgcatccatagtgtatgtgttatattgtcaacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCAACCTGGCTCGTTCGCGTGTGGTGCACGACGGCGCTGACCTGATCGACG
tgttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaggtgtcctctcccttagcgccagacgtcactccaaaccggcggtgaacccatccacacgcatccatagtgtatgtgttatattgtcaacttcacagGCCCAGCTAGGGCCCGGCCTGCAGCCACTGGAAGAGGCCAAGCTGCCGGTCAACCTGGCTCGTTCGCGTGTGGTGCACGACGGCGCTGACCTGATCGACG
- - - - - - - - - - - - cagacgt
- - - - - - - - - - - - - - - - actccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt