Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactagacggacttcgtacgtaaaccctctgttgacggattatgacgcaaaggttatgatcgcgcttgtgttagaccttgaggcgccttagccttggtccatgtctgaacgcctgaattgctgacgagcgttttcccccccgcgctgcatcatcgcatcgacttatcggctacagAGTACATCGATCGCTTTGATGCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09404
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16435426|gb|BM000646.1|BM000646
EST:     CGACAGCGGCGAGGTCAAAGCTGTGTTGTGCTGGCATCACGGTCTGGGAG                         AGTACATCGATCGCTTTGATGCAA
genomic: CGACAGCGGCGAGGTCAAAGCTGTGTTGTGCTGGCATCACGGTCTGGGAGgtgagactag ... tcggctacagAGTACATCGATCGCTTTGATGCAA
EST: gi|23366054|gb|BU653874.1|BU653874
EST:     CGACAGCGGCGAGGTCAAAGCTGTGTTGTGCTGGCATCACGGTCTGGGAG                         AGTACATCGATCGCTTTGATGCAA
genomic: CGACAGCGGCGAGGTCAAAGCTGTGTTGTGCTGGCATCACGGTCTGGGAGgtgagactag ... tcggctacagAGTACATCGATCGCTTTGATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacgagcgttttcccccccgcgctgcatcatcgcatcgacttatcggctacagAGTACATCGATCGCTTTGATGCAA
 tgctgac  putative branch site (score: 2)