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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggcccaagggcgtgggttggaacggcctacgcttgaagctgtctgcttcaaggccccatgatttacgggatttatatgaaattgctgagtctggataacccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTCACGCAACGCCTGAATCGCTTCGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09379
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692741|gb|BI717046.1|BI717046
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|6542204|gb|AV387988.1|AV387988
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|16072325|gb|BI874321.1|BI874321
EST:     ATTTGTGTTTTTACTGCAAGCGGCGCTATTGNGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: ATTTGTGTTTTTACTGCAAGCGGCGCTATTG-GGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|15697133|gb|BI721438.1|BI721438
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|15694492|gb|BI718797.1|BI718797
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|14229549|gb|BG848365.1|BG848365
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|10778288|gb|AV634968.1|AV634968
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|8932577|gb|BE227338.1|BE227338
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|16072624|gb|BI874620.1|BI874620
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|10778289|gb|AV634969.1|AV634969
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|15692624|gb|BI716929.1|BI716929
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|10774326|gb|AV625149.1|AV625149
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
EST: gi|16433071|gb|BI998297.1|BI998297
EST:     TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCG                         CTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC
genomic: TATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGgtgagggccc ... ccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatgatttacgggatttatatgaaattgctgagtctggataacccgatcgcagCTCATATCGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTCACGCAACGCCTGAATCGCTTCGTG
                                      ggataac  putative branch site (score: 3)
               atttatatgaaatt  TA-rich tract