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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgagcaatcattgcgcgctaaccctgttggtcgtgttcatgcttctgctgcctgctcacatcgtttctgcggactagcaccctcgcaattttgttcgtgtgaccgggacgccttgctcgctgtgtatgttgcagGTCGCTGGGTGAATTTCAAGGCGTTTTGGAACGGACCCTACTTCCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09225
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6551983|gb|AV397767.1|AV397767
EST:     CAAAAAGCCCGGCACAGAAGTCAAGCGCGGGCTGATAAAGCCTGACAACA                         GTCGCTGGGTGAATTTCAAGGCGTTTGGGAACGGGCCCTACTTCCTG
genomic: CAAAAAGCCCGGCACAGAAGTCAAGCGCGGGCTGATAAAGCCTGACAACAgtaagcttga ... tatgttgcagGTCGCTGGGTGAATTTCAAGGCGTTTTGGAACGGACCCTACTTCCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctcgcaattttgttcgtgtgaccgggacgccttgctcgctgtgtatgttgcagGTCGCTGGGTGAATTTCAAGGCGTTTTGGAACGGACCCTACTTCCTG
       aattttgtt  TA-rich tract