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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggactcgtgacagttattatggggtggatgtgcttcccaattcaatgtttaggttgtcggccgcattctcgggcagcgggtcgctccgatggctgcatcgcaattctcgaccgttgcggcgcctgctgatttgtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP08586
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239841974|gb|GR283831.1|GR283831
EST:     TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAG                         GCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACC
genomic: TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAGgtaggactcg ... gtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACC
EST: gi|15695845|gb|BI720150.1|BI720150
EST:     TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAG                         GCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACC
genomic: TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAGgtaggactcg ... gtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACC
EST: gi|10785973|gb|AV642645.1|AV642645
EST:     TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAG                         GCGCCAAAGGACCCCATTCTAGGAATCACTGACAAGTTCCTGGCCGACACC
genomic: TTCAGCCTGCTTCGGCTGCGACGACGACCCTGTTCGGCAATGTCGAGCAGgtaggactcg ... gtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatggctgcatcgcaattctcgaccgttgcggcgcctgctgatttgtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG
                                    tgctgat  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggactcgtgacagttattatggggtggatgtgcttcccaattcaatgtttaggttgtcggccgcattctcgggcagcgggtcgctccgatggctgcatcgcaattctcgaccgttgcggcgcctgctgatttgtgagcgcagGCGCCAAAGGACCCCATTCTAGGAATCACTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG