Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP08338
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                                            |||   |||  |   |  | | |    | |    |  |||        | ||||  || | | |  ||||  |             ||||||||||||||| || ||||| ||||||   ||||||||| | || |||||||| || |||||||| || ||||| ||||||  ||| || ||||| ||
---------------------------------------------------------------------------------------------------------gtaagctcccaatcttccccttcactttctcggggc-cagatctgatctgagatgaggttgacacacgacgcatgca------------agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                                   |  ||     | || || ||  | |    |     |  | |    | |   | || |  |||      | | | | |   |  |         ||||||||||| || ||||| || || ||||||   ||||| ||| | || |||||||||||||||||||| ||||| |||||||||  ||| |||||||||||
----------------------------------------------------------------------------------------------gagagaatttgggttggatccatgt--ggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                        |  ||||   ||| |   ||  | | |   |||   |     | || ||||| |   ||||  |        | ||  | |   |||   | ||       ||   ||||||||||||||| || || || ||||||   ||||| ||| | ||||||||||| ||||||||||| ||||| |||||||||  ||| || ||||| ||
--------------------------------------------------------------------------------------gtaagcacccatcagatctccctccctccc--ttctctgtctctttcaccagccgg---atccaacca---tccattc--ctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgc---ctatcccgcggaggctgagtctgcccctccccgcaaacttcatcatt--gtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                                    |    | | |  ||  |||  | ||   | ||||| |  | |    || |  ||    ||| |   ||| |    |    |   | | | ||   | |||||||||||||||||||| || || || |||   ||||| ||| | || || |||||||| ||||| || ||||| |||||||||  ||| |||||||||||
--------------------------------------------------------------------------------------------------tggtccgatcgg-gtgtcagtctgtcgg--attccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgata-aatccagcagcctgcctatcccgcggaggctgagtctgccc---ctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                                      ||   | |   |   ||  ||    | ||  |  ||||||        |    |||| |   ||| |    ||   |     ||| |||    ||||||||||||||| ||||| || || || |||   ||||| ||| | || || |||||||| ||||| || ||||| |||||||||  ||| |||||||||||
---------------------------------------------------------------------------------------------------gatttggtccgatcgggtgtgggatttcagaaatcgacagccttttcccgtcagacaggcaggtcctgactacgctgttcttttgcttgatc-cgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                                                                                                                  |    |||  |   | |||         |||      | |    ||     |  |||  | | |||||||||| || || |||||||||||||||   ||||||||| | || |||||||| |||||| | || ||||| || |||||    || || || |||||
---------------------------------------------------------------------------------------------------------------------------------gtaagccagattctttttcctct-----ttgatctaatcgcaatgcgatggatcaatcgat-tacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072483|gb|BQ821821.1|BQ821821
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161814081|gb|FC100053.1|FC100053
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|239842148|gb|GR284005.1|GR284005
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|8576729|gb|BE129366.1|BE129366
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|34992949|gb|CF566866.1|CF566866
EST:     TTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: TTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|49466218|gb|BP094131.1|BP094131
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161823061|gb|FC106631.1|FC106631
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|49459140|gb|BP087053.1|BP087053
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|49459084|gb|BP086997.1|BP086997
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10770859|gb|AV621684.1|AV621684
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10773256|gb|AV624079.1|AV624079
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10770655|gb|AV621480.1|AV621480
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7615657|gb|AW721097.1|AW721097
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|22076243|gb|BQ825019.1|BQ825019
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7687786|gb|AW758432.1|AW758432
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGTCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGTCGTGGGCATTGCCTACA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|14234925|gb|BG853741.1|BG853741
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|6546053|gb|AV391837.1|AV391837
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161815628|gb|FC102640.1|FC102640
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161820547|gb|FC111039.1|FC111039
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|15367772|gb|BI527198.1|BI527198
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161796663|gb|FC084501.1|FC084501
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|8513970|gb|BE121865.1|BE121865
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|16433852|gb|BI999078.1|BI999078
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|6543063|gb|AV388847.1|AV388847
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10772636|gb|AV623459.1|AV623459
EST:     CGCGCCGTTCTTCGGGTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|14231506|gb|BG850322.1|BG850322
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|16073465|gb|BI875461.1|BI875461
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|16071875|gb|BI873871.1|BI873871
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|9210136|gb|BE337051.1|BE337051
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7545626|gb|AW676114.1|AW676114
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10127215|gb|BE725919.1|BE725919
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|22073320|gb|BQ822658.1|BQ822658
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|22048641|gb|BQ808298.1|BQ808298
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|15370566|gb|BI529992.1|BI529992
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7615847|gb|AW721287.1|AW721287
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|16073539|gb|BI875535.1|BI875535
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161819870|gb|FC110245.1|FC110245
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7616300|gb|AW721740.1|AW721740
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|34985811|gb|CF559728.1|CF559728
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161820572|gb|FC111051.1|FC111051
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10774379|gb|AV625202.1|AV625202
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|22053464|gb|BQ810768.1|BQ810768
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161792813|gb|FC080728.1|FC080728
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|23364391|gb|BU652211.1|BU652211
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161815473|gb|FC104838.1|FC104838
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|49462396|gb|BP090309.1|BP090309
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|49459488|gb|BP087401.1|BP087401
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|34992950|gb|CF566867.1|CF566867
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|15371489|gb|BI530915.1|BI530915
EST:     GCGCCGTTCTTCGGACTTTATCGGCGCTGGCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: GCGCCGTTCTTCGG-CTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|15370568|gb|BI529994.1|BI529994
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|14231505|gb|BG850321.1|BG850321
EST:     GCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCNTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCC
genomic: GCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTC-TCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCC
EST: gi|161802700|gb|FC092433.1|FC092433
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|9461015|gb|BE453521.1|BE453521
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|10768785|gb|AV619610.1|AV619610
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161805621|gb|FC090677.1|FC090677
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|14228602|gb|BG847434.1|BG847434
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|23360673|gb|BU648493.1|BU648493
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAACTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|7593157|gb|AW707520.1|AW707520
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|14239006|gb|BG857838.1|BG857838
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
EST: gi|161816879|gb|FC101365.1|FC101365
EST:     CGCGCCGTTCTTCGGCTTTATCGGCGCTGCTGCTGCCCTGGTCTTCTCTT                         GCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA
genomic: CGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTgtgagtatgg ... cattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT
                                       cttcatc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA