1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcggcacgctctcttgaatgcggaatcggcagctcttcctccttcaggcttccaggggagttcgcggctgctgttactcgcttacatgcttgccttgaaatgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAGCTCGCGACCGATACACCAACGAAATTGTAGCGCTGAAGAAAATTAGGC
species | Chlamydomonas reinhardtii |
transcript | EDP08130 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATGGACAAG TATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAEST: gi|16434131|gb|BI999357.1|BI999357
genomic: ATCATGGACAAGgtgcggcacg ... atgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAA
EST: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAG TATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAEST: gi|15701513|gb|BI725818.1|BI725818
genomic: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAGgtgcggcacg ... atgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAA
EST: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAG TATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAEST: gi|15694668|gb|BI718973.1|BI718973
genomic: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAGgtgcggcacg ... atgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAA
EST: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAG TATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAA
genomic: GGCCACTTGGCCCGCCTGCAGGTGGCGCTGGGGGCCTAATCATGGACAAGgtgcggcacg ... atgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAA
ggggagttcgcggctgctgttactcgcttacatgcttgccttgaaatgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAGCTCGCGACCGATACACCAACGAAATTGTAGCGCTGAAGAAAATTAGGC
cgcttac putative branch site (score: 3)
ttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggcacgctctcttgaatgcggaatcggcagctcttcctccttcaggcttccaggggagttcgcggctgctgttactcgcttacatgcttgccttgaaatgtgcgcagTATGAGAAGCTCGAGCGGGCTGGAGAGGGCACTTATGGTGTCGTCTTCAAAGCTCGCGACCGATACACCAACGAAATTGTAGCGCTGAAGAAAATTAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA