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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgacttgcctcgcgcaagcctctttagtcctatcctgggccacattaaggttccctgcccgagccagcttgaactgtcccctcgcggctccccaccaactcccctgctggccatcgcgcgctgtagGTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATCGAGAAAATGGTCTCTTTCTTCTTCCCGAAGGCGCTGTCCGACCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP07963
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695838|gb|BI720143.1|BI720143
EST:     CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTG                         GTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
genomic: CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTGgtgagctgac ... cgcgctgtagGTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
EST: gi|23361546|gb|BU649366.1|BU649366
EST:     CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTG                         GTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
genomic: CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTGgtgagctgac ... cgcgctgtagGTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
EST: gi|10794083|gb|AV631449.1|AV631449
EST:     CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTG                         GTGCTGGTACGTGCCAAGCCACAGGACGG-AAACAGGAGCTCGACCCCATC
genomic: CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTGgtgagctgac ... cgcgctgtagGTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
EST: gi|15368419|gb|BI527845.1|BI527845
EST:     CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTG                         GTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC
genomic: CGGGACTTCCGCGCCCGTGGGGGTTGGCGCGCCCCGCGCCCGCCTGTGTGgtgagctgac ... cgcgctgtagGTGCTGGTACGTGCCAAGCCACAGGACGGCAAACAGGAGCTCGACCCCATC