1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaagatatggcgctcctggcctctgaactgggcttcactaaataccagcttcgaagcactgctgaactgacgagtccctgtggcgggtgttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTGATGGCGCAGCTGGAGACAAAGGATCCCTCGCCGGAGTCGTTCATCTAC
species | Chlamydomonas reinhardtii |
transcript | EDP07948 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGG GTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTEST: gi|49469261|gb|BP097122.1|BP097122
genomic: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGgtgagcagca ... ttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
EST: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGG GTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTEST: gi|161795781|gb|FC087609.1|FC087609
genomic: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGgtgagcagca ... ttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
EST: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGG GTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTEST: gi|9210131|gb|BE337046.1|BE337046
genomic: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGgtgagcagca ... ttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
EST: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGG GTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTEST: gi|23362331|gb|BU650167.1|BU650167
genomic: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGgtgagcagca ... ttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
EST: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGG GTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
genomic: GGCTCCACCACCAAGGTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGgtgagcagca ... ttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGT
ccagcttcgaagcactgctgaactgacgagtccctgtggcgggtgttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTGATGGCGCAGCTGGAGACAAAGGATCCCTCGCCGGAGTCGTTCATCTAC
aactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagatatggcgctcctggcctctgaactgggcttcactaaataccagcttcgaagcactgctgaactgacgagtccctgtggcgggtgttgtttgcagGTACACCGGTTATGTCCAGGGTTTACAGGAGACCTACAAAAAGACTCCTGTGATGGCGCAGCTGGAGACAAAGGATCCCTCGCCGGAGTCGTTCATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - aaatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aagcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgac