Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccttctgcgatgccgttcgcgctgtagagcgttgtgactggcgtgtttgtgttcggcccctccttggatcccatttaccaccagtcagcgtggtgacggagacctcgtggaggtcgcgttaagtcatccggctctgactgacgtgcctgcaactattcttcaactattcagGTTCTTCAACTATTCTGCGCTACGGCAGTTATTCAAGCGATATCTGCACATCAATGCTCGAGTGCTCCACGTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07781
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14226884|gb|BG845700.1|BG845700
EST:     CAGCGCTACGCGCCAGGCGCTCCGGGAGATGCTCCGAAGCATTTCGACTG                         GTTCTTCAACTATTCTGCGCTACGGCAGTTATTCAAGCGATATCTGCACAT
genomic: CAGCGCTACGCGCCAGGCGCTCCGGGAGATGCTCCGAAGCATTTCGACTGgtaggccttc ... aactattcagGTTCTTCAACTATTCTGCGCTACGGCAGTTATTCAAGCGATATCTGCACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttaagtcatccggctctgactgacgtgcctgcaactattcttcaactattcagGTTCTTCAACTATTCTGCGCTACGGCAGTTATTCAAGCGATATCTGCACATCAATGCTCGAGTGCTCCACGTCG
                   gactgac  putative branch site (score: 2)
                                       ttcttca  putative PPT
                                  aactatt  TA-rich tract