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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgatagcatctggcgttccagccgtttgcgttcgcgcgcggacatccctttctggatcggcactgttgaatgccggcccgcttccttgccgtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTCATCAGCCGGCAGGCGACTATCAACATTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07730
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783620|gb|AV640292.1|AV640292
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14229768|gb|BG848584.1|BG848584
EST:     TAGCAGTTTCGCAACCATGTCTAAGTCTAAGACCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: TAGCAGTTTCGCAACCATGTCTAAGTCTAAG-CCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10786874|gb|AV643546.1|AV643546
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14229769|gb|BG848585.1|BG848585
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10780657|gb|AV637337.1|AV637337
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10793204|gb|AV630570.1|AV630570
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14238988|gb|BG857804.1|BG857804
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10782693|gb|AV639365.1|AV639365
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|49468820|gb|BP096681.1|BP096681
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttctggatcggcactgttgaatgccggcccgcttccttgccgtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTCATCAGCCGGCAGGCGACTATCAACATTG
                                   cttccttgccgtctcc  CT-rich tract