Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacacagaaaacgggcttgcttgtcgtcgcaaagctggcactggatgcctgtgcgcaagcaacccgcgtgctaactgcttctctgtgccacgcagGTACATGTTCATATG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07669
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697603|gb|BI721908.1|BI721908
EST:     CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTC                         GTACATGTTCATATG
genomic: CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTCgtaagtgaca ... tgccacgcagGTACATGTTCATATG
EST: gi|15695856|gb|BI720161.1|BI720161
EST:     CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTC                         GTACATGTTCATATG
genomic: CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTCgtaagtgaca ... tgccacgcagGTACATGTTCATATG
EST: gi|10790752|gb|AV628118.1|AV628118
EST:     CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTC                         GTACATGTTCATATG
genomic: CAAGGAAGCAAGCAGCAAGGGCTTGGAATGCAGCTCTTGGTAACATATTCgtaagtgaca ... tgccacgcagGTACATGTTCATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggatgcctgtgcgcaagcaacccgcgtgctaactgcttctctgtgccacgcagGTACATGTTCATATG
                            tgctaac  putative branch site (score: 1)
 cttctctgt  putative PPT