1 5' 3' | 2 5' 3' | 3 5' 3' |
gcaggtcaagcaagagagccccggccagggctctccgaatcatgtctccgcagctcctcgagctaaccgccctcactgctctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCCATGTGCATTGACCAGTCGGACAATGAGCTGACCTGCCTTGAGGCGATCC
species | Chlamydomonas reinhardtii |
transcript | EDP07139 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCCEST: gi|10770647|gb|AV621472.1|AV621472
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
EST: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCCEST: gi|23364755|gb|BU652575.1|BU652575
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
EST: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
cgaatcatgtctccgcagctcctcgagctaaccgccctcactgctctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCCATGTGCATTGACCAGTCGGACAATGAGCTGACCTGCCTTGAGGCGATCC
ccctcactgctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggtcaagcaagagagccccggccagggctctccgaatcatgtctccgcagctcctcgagctaaccgccctcactgctctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCCATGTGCATTGACCAGTCGGACAATGAGCTGACCTGCCTTGAGGCGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA