1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaatatgggacgtgtagatggtagccatgaaagcgacgtctcaaggtgacaaacgttgcaacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTCAGGAGGTCCTTGGGCTGTTCTACGAGTTGACACAAACATGGGTGAAGG
species | Chlamydomonas reinhardtii |
transcript | EDP06435 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10792976|gb|AV630342.1|AV630342
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10790553|gb|AV627919.1|AV627919
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10791714|gb|AV629080.1|AV629080
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10794068|gb|AV631434.1|AV631434
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|6551962|gb|AV397746.1|AV397746
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10792134|gb|AV629500.1|AV629500
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10793190|gb|AV630556.1|AV630556
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTEST: gi|10791816|gb|AV629182.1|AV629182
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
EST: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAG TTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
genomic: ATTCTCTTCCTTCAGCAGAGGACAAACGGCACAGCGCTGAGCTAGAACAGgtaaatatgg ... caacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatgggacgtgtagatggtagccatgaaagcgacgtctcaaggtgacaaacgttgcaacttgcagTTCCTTCGCGATGCCGGCCTCTATGAGCCGGACGAGGACGCCTACCTCCGTCAGGAGGTCCTTGGGCTGTTCTACGAGTTGACACAAACATGGGTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT