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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtagtgtagacagcgcacacttgccgccgacgcgacgaccgagccgcggctgtgttgtgaacccgggggggcgctgtaagggcttcgcttcaactctgcctacctcccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05930
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05930 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagtgtagtgtagacagcgcacacttgccgccgacgcgacgaccgagccgcggctgtgttgtgaacccgggggggcgctgtaagggcttcgcttcaactctgcctacctcccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA
                || | | | | |  || || |   |    |   ||   | |   |||   ||  || |     ||  ||  |||| |||     |  |      |  ||   ||||  ||||||| ||||| ||||| || ||||||||  ||||||| || ||||||||||| ||||||||  |
--------------tccatcactctccttacggcgtctgaattgacctacc--agtttctttgccgacatggtgat---cttgaaaagcttggctcatgtttcg---gtgtggcctttgcagAATGATGCTCGTCGGTTGGGGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465125|gb|BP093038.1|BP093038
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|22049824|gb|BQ808947.1|BQ808947
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|9027625|gb|BE237665.1|BE237665
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|22063814|gb|BQ815437.1|BQ815437
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|9460519|gb|BE453275.1|BE453275
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGCAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|161792254|gb|FC080338.1|FC080338
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
EST: gi|49470986|gb|BP098847.1|BP098847
EST:     ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGG                         TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG
genomic: ACCTCCACCAGCTACCAGTTCCGCGTGGACCGCCGCGTTCCCAAGCTTGGgtaagtgtag ... ccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgggggggcgctgtaagggcttcgcttcaactctgcctacctcccccgcgcagTGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA
                                ctctgcctacctcccc  CT-rich tract