1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gggttcggggtaggggcagcgctaggcaacggtgcctggcagagcggggtcccctccctgctgctatgcctgccccaacacgttgcgttgactggcgcagACCGTCAGCGGGCGGCTGTCGCGGCACGTGAACAAGAAGCGCGATGTGCTGCTGGCGGGCATTGACCGAGTCGCCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP05767 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ggggtcccctccctgctgctatgcctgccccaacacgttgcgttgactggcgcagACCGTCAGCGGGCGGCTGTCGCGGCACGTGAACAAGAAGCGCGATGTGCTGCTGGCGGGCATTGACCGAGTCGCCGAG
cgttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttcggggtaggggcagcgctaggcaacggtgcctggcagagcggggtcccctccctgctgctatgcctgccccaacacgttgcgttgactggcgcagACCGTCAGCGGGCGGCTGTCGCGGCACGTGAACAAGAAGCGCGATGTGCTGCTGGCGGGCATTGACCGAGTCGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcgtt