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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcagctcgcctgctttgccagctttgatcgcgtgctgtattcgtaagtcaccgttaccttatatgtcatctgttcggggctctctggagcgacacacggggtggcgagcgcgccatcgggagcttggttcttgcagcgcggactggtgccatacatacttgttttgcatctgatatacccgtatacagCCAAGCACTTTACGGCTTCTATCGCGGGCTACACGCGAGCCATCGAGCTGAACCCCAACAACGCCATCTACTGGGCAAACCGCGCGGCCGCGAACATCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05732
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791724|gb|AV629090.1|AV629090
EST:     TATCGCTCAGGCGGAAAAAGCCAAGGAGGAGGCAAACGCGAACTTCAAGG                         CCAAGCACTTTACGGCTTCTATCGCGGGCTACACGCGAGCCATCGAGCTGA
genomic: TATCGCTCAGGCGGAAAAAGCCAAGGAGGAGGCAAACGCGAACTTCAAGGgtgagtgcag ... ccgtatacagCCAAGCACTTTACGGCTTCTATCGCGGGCTACACGCGAGCCATCGAGCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcgcggactggtgccatacatacttgttttgcatctgatatacccgtatacagCCAAGCACTTTACGGCTTCTATCGCGGGCTACACGCGAGCCATCGAGCTGAACCCCAACAACGCCATCTACTGGGCAAACCGCGCGGCCGCGAACATCAA
                                  atctgat  putative branch site (score: 4)
                 atacata  TA-rich tract