Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgactttgtttcagatcccgggcttgctgggtgtagaactgggttggaactgaggacactaggcgaaaattgcccatgtggtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGAAGCAAAAGAAGCGCGATACGGCAGCCAGCCTGGGGGCAAAGCTGCCGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05705
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437814|gb|BM003034.1|BM003034
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|22063603|gb|BQ815318.1|BQ815318
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|15368325|gb|BI527751.1|BI527751
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|14225963|gb|BG844779.1|BG844779
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|16437276|gb|BM002496.1|BM002496
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|8401114|gb|BE056748.1|BE056748
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|15695862|gb|BI720167.1|BI720167
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|23363212|gb|BU651032.1|BU651032
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|10126813|gb|BE725517.1|BE725517
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|15693748|gb|BI718053.1|BI718053
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: gi|10794172|gb|AV631538.1|AV631538
EST:     ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG                         GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactgggttggaactgaggacactaggcgaaaattgcccatgtggtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGAAGCAAAAGAAGCGCGATACGGCAGCCAGCCTGGGGGCAAAGCTGCCGA
                              aaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtgactttgtttcagatcccgggcttgctgggtgtagaactgggttggaactgaggacactaggcgaaaattgcccatgtggtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGAAGCAAAAGAAGCGCGATACGGCAGCCAGCCTGGGGGCAAAGCTGCCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC