1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcacgtacaatatcacataccttataacgtgctggacatgccggaaaggtccgattgcgccgaccgttcctgaccccactttccggcatgcctgcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACATCGCCAAGCAGAAGGGGTTCTACGAGGAGGCGGGACTGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP05682 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCCATCAAG GTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACEST: gi|16438210|gb|BM003430.1|BM003430
genomic: GGCTCCCATCAAGgcacgtacaa ... gcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTAC
EST: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAG GTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACEST: gi|15704339|gb|BI728644.1|BI728644
genomic: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAGgcacgtacaa ... gcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTAC
EST: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAG GTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACEST: gi|16436915|gb|BM002135.1|BM002135
genomic: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAGgcacgtacaa ... gcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTAC
EST: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAG GTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTAC
genomic: TCCGGATTTTGAGCTGCTCCTGCCAAGTGCCAACCATGGCTCCCATCAAGgcacgtacaa ... gcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTAC
gtccgattgcgccgaccgttcctgaccccactttccggcatgcctgcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACATCGCCAAGCAGAAGGGGTTCTACGAGGAGGCGGGACTGGAG
tcctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacgtacaatatcacataccttataacgtgctggacatgccggaaaggtccgattgcgccgaccgttcctgaccccactttccggcatgcctgcgcatccagGTCGGTGTAGCTTTGGACTGGACACCCAACACCAACCATGCAGGATTCTACATCGCCAAGCAGAAGGGGTTCTACGAGGAGGCGGGACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG