1 5' 3' | 2 5' 3' |
...gataggcactggtgccggaagcaccagccgcacgcctccacacgcacgcccgtcctagcccgcctcacctctccttcccccctctcccgtctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGCGCAGACAAATGCCACCTTCCTGAAGCTGGCGGGGCCACAGCTGGTCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP05634 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTG CTACAGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGCEST: gi|15693106|gb|BI717411.1|BI717411
genomic: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTGgtgagtgccg ... ctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGC
EST: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTG CTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGCEST: gi|161804748|gb|FC091637.1|FC091637
genomic: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTGgtgagtgccg ... ctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGC
EST: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTG CTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGC
genomic: AAGGACCGCTTCACCAAGCTGGGCATCAAGCCGCCAAAGGGCGTGCTGTGgtgagtgccg ... ctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGC
acgcccgtcctagcccgcctcacctctccttcccccctctcccgtctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGCGCAGACAAATGCCACCTTCCTGAAGCTGGCGGGGCCACAGCTGGTCCAG
gcctcac putative branch site (score: 3)
cccgcctcacctctcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataggcactggtgccggaagcaccagccgcacgcctccacacgcacgcccgtcctagcccgcctcacctctccttcccccctctcccgtctcctcacagCTACGGCCCTCCCGGCACGGGCAAGACGCTCATTGCGCGTGCGGTGGCGGCGCAGACAAATGCCACCTTCCTGAAGCTGGCGGGGCCACAGCTGGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
-ataggca
- - - - - - - - - aagcacc
- - - - - - - - - - - - -agccgca
- - - - - - - - - - - - - - - - - - - -acacgca