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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactagacgcaacttgggagctggctctgccgccggcagcagacatcagacttttattctaggcggcagcgctatacctgactcgctcgctaccttgccatcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05500
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34988161|gb|CF562078.1|CF562078
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34988803|gb|CF562720.1|CF562720
EST:     GCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10783401|gb|AV640073.1|AV640073
EST:     CAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: CAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10125832|gb|BE724536.1|BE724536
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34988802|gb|CF562719.1|CF562719
EST:     GCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34986739|gb|CF560656.1|CF560656
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|15372414|gb|BI531840.1|BI531840
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34993615|gb|CF567532.1|CF567532
EST:     TCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10788274|gb|AV644946.1|AV644946
EST:     GTGCTTTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GTGCTTTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10786077|gb|AV642749.1|AV642749
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10788170|gb|AV644842.1|AV644842
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctaggcggcagcgctatacctgactcgctcgctaccttgccatcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG
                     acctgac  putative branch site (score: 3)