Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccggacaggcgtcggggcaggcacgcgaaggtgctaggcaggcccgctgagggctgtttggcggccgttctgacgtgagccgtttgcttttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAACGGCACTGTTGTGGAGGACCCGGAGCTGGGCAAGGTCATTCAGCTGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05192
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05192 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: EFJ38377 (Selaginella moellendorffii), 3'ss of exon 2
cccggacaggcgtcggggcaggcacgcgaaggtgctaggcaggcccgctgagggctgtttggcggccgttctgacgtgagccgtttgcttttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAACGGCACTGTTGTGGAGGACCCGGAGCTGGGCAAGGTCATTCAGCTGCAG-------------------------------------
           ||  | | ||   |       |  |   |    | |   || ||   ||  |  |   |||     ||   |  |    ||   |  |  |             || |   | |    |   | |||| ||||||||||||||||| || ||| | || |||||||||||  |||| |||||||| |||                                     
-----------gtaagag-agatccatcgccctctttcccctctcagactagagcgaattcccctcttctctcgatcgaattggctcgaattggctctaaatctcgtcgtg----ggcg---acgattgtttggcagGAATTCTGCTGCAACGGCACCGTGGTGCAAGATCCGGAGCTGGGTCAGGTGATTCAGCTACAGGGCGATCAGCGCAAGAATGTGTCGCAGTTCCTCGTCC

upper sequence: EDP05192 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: EFJ14846 (Selaginella moellendorffii), 3'ss of exon 2
cccggacaggcgtcggggcaggcacgcgaaggtgctaggcaggcccgctgagggctgtttggcggccgttctgacgtgagccgtttgcttttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAACGGCACTGTTGTGGAGGACCCGGAGCTGGGCAAGGTCATTCAGCTGCAG-------------------------------------
           ||  | |    |   ||       |   |||||      || ||   ||  |  |  ||||     ||   |  |    ||   |  |  |             || |   | |    |   | |||| ||||||||||||||||| || ||| | || |||||||||||  |||| |||||||| |||                                     
-----------gtaagagagatccatcgccctctttccccaggct-----agagcgaattcccctcttttctcgatcgaattggctcgaattggctctaaatctcgtcgtg----ggcg---acgattgtttggcagGAATTCTGCTGCAACGGCACCGTGGTGCAAGATCCGGAGCTGGGTCAGGTGATTCAGCTACAGGGCGATCAGCGCAAGAATGTGTCGCAGTTCCTCGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700952|gb|BI725257.1|BI725257
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|7615920|gb|AW721360.1|AW721360
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771308|gb|AV622131.1|AV622131
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14236375|gb|BG855191.1|BG855191
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6550174|gb|AV395958.1|AV395958
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15699965|gb|BI724270.1|BI724270
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10768330|gb|AV619155.1|AV619155
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22065217|gb|BQ816252.1|BQ816252
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9459278|gb|BE452527.1|BE452527
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772128|gb|AV622951.1|AV622951
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAGCCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772013|gb|AV622836.1|AV622836
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10773040|gb|AV623863.1|AV623863
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6541904|gb|AV387688.1|AV387688
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770145|gb|AV620970.1|AV620970
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|23359633|gb|BU647453.1|BU647453
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|8514205|gb|BE122100.1|BE122100
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071543|gb|BI873539.1|BI873539
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22058683|gb|BQ813067.1|BQ813067
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15693264|gb|BI717569.1|BI717569
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTGCGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22058686|gb|BQ813068.1|BQ813068
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6546600|gb|AV392384.1|AV392384
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCATGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22066162|gb|BQ816795.1|BQ816795
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770626|gb|AV621451.1|AV621451
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16428652|gb|BI993878.1|BI993878
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771582|gb|AV622405.1|AV622405
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGGGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15701221|gb|BI725526.1|BI725526
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15372977|gb|BI532403.1|BI532403
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15700954|gb|BI725259.1|BI725259
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22072445|gb|BQ821783.1|BQ821783
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22075235|gb|BQ824011.1|BQ824011
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771717|gb|AV622540.1|AV622540
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10788520|gb|AV626240.1|AV626240
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071564|gb|BI873560.1|BI873560
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15700953|gb|BI725258.1|BI725258
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9459074|gb|BE452424.1|BE452424
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22063699|gb|BQ815372.1|BQ815372
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14238466|gb|BG857282.1|BG857282
EST:     CGCAAGTCTCTGACAACCGTCCAGGGT-TCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15372824|gb|BI532250.1|BI532250
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|49458977|gb|BP086890.1|BP086890
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770403|gb|AV621228.1|AV621228
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16073148|gb|BI875144.1|BI875144
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|7687070|gb|AW757718.1|AW757718
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771916|gb|AV622739.1|AV622739
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9441295|gb|BE441899.1|BE441899
EST:     CAGCGCAACGGCCGCAAGTCTCTGACGACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22066908|gb|BQ817228.1|BQ817228
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772712|gb|AV623535.1|AV623535
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071585|gb|BI873581.1|BI873581
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14236442|gb|BG855258.1|BG855258
EST:     GCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAAAA                         GTACGACTACAACAGGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: GCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22064629|gb|BQ815913.1|BQ815913
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22063420|gb|BQ815200.1|BQ815200
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgagggctgtttggcggccgttctgacgtgagccgtttgcttttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAACGGCACTGTTGTGGAGGACCCGGAGCTGGGCAAGGTCATTCAGCTGCAG
                       ttctgac  putative branch site (score: 2)
                                   ccgtttgcttttcttt  putative PPT
                                           ttttcttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - -aggcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctt