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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggccgccgcccttgcgggtctagagggcactaatttcgcgggccgccgcagccgggccagacgcgctaacgcccctgctcgtgccgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGAGAGCTTCGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05185
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161802951|gb|FC088290.1|FC088290
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6549529|gb|AV395313.1|AV395313
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161824195|gb|FC107778.1|FC107778
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161799270|gb|FC086416.1|FC086416
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161794288|gb|FC079382.1|FC079382
EST:     GAGCGCACCGGTTTCGATGACCGCGTCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|10787722|gb|AV644394.1|AV644394
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161798909|gb|FC084651.1|FC084651
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161823947|gb|FC106867.1|FC106867
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|49470641|gb|BP098502.1|BP098502
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161815305|gb|FC101563.1|FC101563
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161807216|gb|FC097289.1|FC097289
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|7615264|gb|AW720713.1|AW720713
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161803933|gb|FC093562.1|FC093562
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6549243|gb|AV395027.1|AV395027
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|10786794|gb|AV643466.1|AV643466
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|22073702|gb|BQ823040.1|BQ823040
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161823719|gb|FC108563.1|FC108563
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|7413132|gb|AW651886.1|AW651886
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161795147|gb|FC078798.1|FC078798
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161805270|gb|FC090339.1|FC090339
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161809087|gb|FC095741.1|FC095741
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161819586|gb|FC106685.1|FC106685
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161809240|gb|FC098676.1|FC098676
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161805086|gb|FC092534.1|FC092534
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161800297|gb|FC082776.1|FC082776
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161810895|gb|FC099648.1|FC099648
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161793133|gb|FC078097.1|FC078097
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|10780020|gb|AV636700.1|AV636700
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161800248|gb|FC082766.1|FC082766
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161791041|gb|FC080290.1|FC080290
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6540958|gb|AV386742.1|AV386742
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161818543|gb|FC103900.1|FC103900
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6541017|gb|AV386801.1|AV386801
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|7615283|gb|AW720731.1|AW720731
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161798929|gb|FC082994.1|FC082994
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161819113|gb|FC108071.1|FC108071
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161808677|gb|FC096774.1|FC096774
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161791840|gb|FC081478.1|FC081478
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6547009|gb|AV392793.1|AV392793
EST:     ACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: ACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|49464300|gb|BP092213.1|BP092213
EST:     TCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: TCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6543780|gb|AV389564.1|AV389564
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161798315|gb|FC084330.1|FC084330
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161794959|gb|FC077427.1|FC077427
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161820319|gb|FC109186.1|FC109186
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161823566|gb|FC109021.1|FC109021
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161821088|gb|FC110033.1|FC110033
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161823707|gb|FC106081.1|FC106081
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6546911|gb|AV392695.1|AV392695
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161824005|gb|FC107718.1|FC107718
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161792212|gb|FC079815.1|FC079815
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161821331|gb|FC106506.1|FC106506
EST:     GCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161805008|gb|FC091689.1|FC091689
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161793233|gb|FC081005.1|FC081005
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161818607|gb|FC102794.1|FC102794
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6551724|gb|AV397508.1|AV397508
EST:     GCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161797029|gb|FC086791.1|FC086791
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|6546580|gb|AV392364.1|AV392364
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161822634|gb|FC108492.1|FC108492
EST:     AGCGCACCNGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: AGCGCACC-GGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161821413|gb|FC106536.1|FC106536
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
EST: gi|161795346|gb|FC078542.1|FC078542
EST:     GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTT                         CCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA
genomic: GAGCGCACCGGTTTCGATGACCGCGCCTTCGACACGAAGATGCAGCAGTTgtgagtggcc ... cgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggccgccgcagccgggccagacgcgctaacgcccctgctcgtgccgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGAGAGCTTCGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTAC
                        cgctaac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtggccgccgcccttgcgggtctagagggcactaatttcgcgggccgccgcagccgggccagacgcgctaacgcccctgctcgtgccgtatcgcagCCTGGGCAACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGAGAGCTTCGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC