1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagttcttctcgccgacgcatttctctcgctgcttctagactgaacccgcctgcccacctggcctagcaccactcgcccagatcagcgtctgatcgctatgtttgtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|10782915|gb|AV639587.1|AV639587
genomic: GTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: GTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|10786054|gb|AV642726.1|AV642726
genomic: GTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|49467062|gb|BP094975.1|BP094975
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|6552100|gb|AV397884.1|AV397884
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|22051882|gb|BQ809934.1|BQ809934
genomic: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: GCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|6547392|gb|AV393176.1|AV393176
genomic: GCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: TAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|49465381|gb|BP093294.1|BP093294
genomic: TAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|6546630|gb|AV392414.1|AV392414
genomic: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CATATTCCTGCAGTCATGGCATGGCTCCCAGTATGTCTG GTCGTTCCAGGCGAATGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCEST: gi|49460469|gb|BP088382.1|BP088382
genomic: CATATTCCTGCAGTCATGGCA-GGCACCCAG-ATG-C-Ggtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAA-GTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGC
EST: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAGEST: gi|15702828|gb|BI727133.1|BI727133
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
tggcctagcaccactcgcccagatcagcgtctgatcgctatgtttgtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
gtctgat putative branch site (score: 4)
tatgttt TA-rich tract