Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtgcccaaacgatgctttctcagcacgcccagggcttgcattcgtgacactgtcgcttgcgtctcctcaacctgtgcctgcgtggctccccttgtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03835
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22076975|gb|BQ825751.1|BQ825751
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|14226250|gb|BG845066.1|BG845066
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAAGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|23365334|gb|BU653154.1|BU653154
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|22065629|gb|BQ816456.1|BQ816456
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|14228702|gb|BG847518.1|BG847518
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|49468177|gb|BP096038.1|BP096038
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|10793133|gb|AV630499.1|AV630499
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|14226251|gb|BG845067.1|BG845067
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAAGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|22076877|gb|BQ825653.1|BQ825653
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
EST: gi|10789963|gb|AV627328.1|AV627328
EST:     CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAG                         GATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC
genomic: CGGTAGCAGCAGCCATGGGCGAGGACAAGAAGCACGAGGATCCTGACAAGgtgagagtgc ... gtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtcgcttgcgtctcctcaacctgtgcctgcgtggctccccttgtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG
                                     ctccccttgt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagagtgcccaaacgatgctttctcagcacgcccagggcttgcattcgtgacactgtcgcttgcgtctcctcaacctgtgcctgcgtggctccccttgtggcttcagGATGCCCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC