1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtttatccccaccaattcgcaactgtcctttgcgccgcacctagcctttgctcgtgaacaccgcccctgacggctgcctgccactctgtatttttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGGTGGCCAAGCAGATTCTTGCCGGGCAGCAGATT
species | Chlamydomonas reinhardtii |
transcript | EDP03478 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49461349|gb|BP089262.1|BP089262
genomic: TTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|22070656|gb|BQ819994.1|BQ819994
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: TGCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49459573|gb|BP087486.1|BP087486
genomic: TGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|22075318|gb|BQ824094.1|BQ824094
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49468725|gb|BP096586.1|BP096586
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|10790747|gb|AV628113.1|AV628113
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161809876|gb|FC094697.1|FC094697
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GTTTGCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|10779988|gb|AV636668.1|AV636668
genomic: GTTTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: CAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|7615668|gb|AW721108.1|AW721108
genomic: CAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|10779306|gb|AV635986.1|AV635986
genomic: AAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161796317|gb|FC083400.1|FC083400
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49460297|gb|BP088210.1|BP088210
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|55562639|gb|AV637706.2|AV637706
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161799052|gb|FC082415.1|FC082415
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACTTGCTGGGCCGCCTGGCCTTTGTGEST: gi|161814807|gb|FC100649.1|FC100649
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49461249|gb|BP089162.1|BP089162
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161796316|gb|FC083399.1|FC083399
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATTGACGGGCGCGCCCTCTTGCTGGGCCGCCTGGCCTCTGTGEST: gi|22052790|gb|BQ810403.1|BQ810403
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|16072271|gb|BI874267.1|BI874267
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|22076528|gb|BQ825304.1|BQ825304
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161811962|gb|FC096152.1|FC096152
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|9458820|gb|BE452542.1|BE452542
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|22052795|gb|BQ810404.1|BQ810404
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161799053|gb|FC082416.1|FC082416
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|49467006|gb|BP094919.1|BP094919
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|10785634|gb|AV642306.1|AV642306
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AAAGAAGATGCCTAAG AGTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|7709616|gb|AW772987.1|AW772987
genomic: AAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|161800350|gb|FC082790.1|FC082790
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|22076529|gb|BQ825305.1|BQ825305
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: GTTTGCCAAAGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|7545729|gb|AW676217.1|AW676217
genomic: GTTTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGEST: gi|10780061|gb|AV636741.1|AV636741
genomic: AAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: AGAAGATGCCTAAG ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
tgctcgtgaacaccgcccctgacggctgcctgccactctgtatttttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGGTGGCCAAGCAGATTCTTGCCGGGCAGCAGATT
ccctgac putative branch site (score: 3)
tattttt putative PPT
tgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttatccccaccaattcgcaactgtcctttgcgccgcacctagcctttgctcgtgaacaccgcccctgacggctgcctgccactctgtatttttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTGGTGGCCAAGCAGATTCTTGCCGGGCAGCAGATT
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