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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtccgggagcccctggtaccagagaaacatctaatagataggctaactgtaatggggcgcaaaacctcagtagggtagctgcaaccttctgggatgatcgagcaactttgcctaacccgcaagtccgctgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAATCCCCACCATCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03455
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791151|gb|AV628517.1|AV628517
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
EST: gi|9210221|gb|BE337136.1|BE337136
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
EST: gi|15698798|gb|BI723103.1|BI723103
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
EST: gi|15698799|gb|BI723104.1|BI723104
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
EST: gi|161800655|gb|FC085903.1|FC085903
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
EST: gi|15698797|gb|BI723102.1|BI723102
EST:     GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAG                         GCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA
genomic: GTTCGGGGACCAAGAAGCTAGAATTCTCGTGCTCGGTCTGGACAACGCAGgcaagtccgg ... tgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttctgggatgatcgagcaactttgcctaacccgcaagtccgctgcaccgcagGCAAAACAACCATTCTATACCGGCTCCAGGTTGGCGAGGTGGTATCGACAATCCCCACCATCG
                          gcctaac  putative branch site (score: 2)