1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacgagcagccaagtacaatgcgctgtgagagatgcatggcagtctgggccgctgcgctttcgctgaccttgccgaccctgttggccccccccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCGGCCGTTCGAGTACCTGCGCCTGACCAGCCTGGGCGTGATCGGCGCGCT
species | Chlamydomonas reinhardtii |
transcript | EDP02995 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|14231748|gb|BG850564.1|BG850564
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|14239511|gb|BG858327.1|BG858327
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|23364701|gb|BU652521.1|BU652521
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAA-CCATGAGCAAAACGCEST: gi|15692949|gb|BI717254.1|BI717254
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|15703498|gb|BI727803.1|BI727803
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTTCTCCAAG CGCACATCCCGCTCTTTCTGTEST: gi|6545786|gb|AV391570.1|AV391570
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGT
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|14231749|gb|BG850565.1|BG850565
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCEST: gi|14239421|gb|BG858237.1|BG858237
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTACAAG CGCACATTCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
tgggccgctgcgctttcgctgaccttgccgaccctgttggccccccccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCGGCCGTTCGAGTACCTGCGCCTGACCAGCCTGGGCGTGATCGGCGCGCT
cgctgac putative branch site (score: 3)
ttggccccccccctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacgagcagccaagtacaatgcgctgtgagagatgcatggcagtctgggccgctgcgctttcgctgaccttgccgaccctgttggccccccccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGCGGCCGTTCGAGTACCTGCGCCTGACCAGCCTGGGCGTGATCGGCGCGCT
-acgagca
- - - - - -aagtaca
- - - - - - - - - - - - - - - agatgca