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gtgaggcttataagtgtggaattgcggggaggcctgcaacgtgcgcacgcgtgctgctgcactggctttccttccaacccgacacgcgtacttgctgcgttgacgcccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTTCTGAAGGAGTGCATEST: gi|15692808|gb|BI717113.1|BI717113
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGG-TCTGAAGGAGTGCAT
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|15695185|gb|BI719490.1|BI719490
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|10792553|gb|AV629919.1|AV629919
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|10778846|gb|AV635526.1|AV635526
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|23367697|gb|BU655515.1|BU655515
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|16072685|gb|BI874681.1|BI874681
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|23363461|gb|BU651281.1|BU651281
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|15695448|gb|BI719753.1|BI719753
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|8933063|gb|BE227824.1|BE227824
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|16437590|gb|BM002810.1|BM002810
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|16431544|gb|BI996770.1|BI996770
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|22050064|gb|BQ809049.1|BQ809049
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|23365706|gb|BU653526.1|BU653526
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCEST: gi|15697745|gb|BI722050.1|BI722050
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: GCGGTTTGCTTCTATTTTAAAAGCATCGCGCTAGCGGTCCATCCACCATG AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
actggctttccttccaacccgacacgcgtacttgctgcgttgacgcccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG
cgttgac putative branch site (score: 4)
cgcccttttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcttataagtgtggaattgcggggaggcctgcaacgtgcgcacgcgtgctgctgcactggctttccttccaacccgacacgcgtacttgctgcgttgacgcccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG