1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtgttatatctgtgacaaacaaaacactcaaaaataagcttctgcaaagctcctcggcacattgggctcgtgctacttgacttcctgctttaccgacagTGCGCGCAGCGGAAACTATAAACATGTCGGCCCTTGCAGCTTCTCACCACGGCCACGCCGCCAAGCCGCAGGCTCGCGAGCGAGCCCCG
species | Chlamydomonas reinhardtii |
transcript | EDP01901 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
caaagctcctcggcacattgggctcgtgctacttgacttcctgctttaccgacagTGCGCGCAGCGGAAACTATAAACATGTCGGCCCTTGCAGCTTCTCACCACGGCCACGCCGCCAAGCCGCAGGCTCGCGAGCGAGCCCCG
acttgac putative branch site (score: 4)
cttcctgctttacc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgttatatctgtgacaaacaaaacactcaaaaataagcttctgcaaagctcctcggcacattgggctcgtgctacttgacttcctgctttaccgacagTGCGCGCAGCGGAAACTATAAACATGTCGGCCCTTGCAGCTTCTCACCACGGCCACGCCGCCAAGCCGCAGGCTCGCGAGCGAGCCCCG
agtgtta
- - - -tatctgt
- - - - - - - -acaaaca
- - - - - - - - - - - - acactca
- - - - - - - - - - - - - - - - aaataagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacatt