Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggcgtggtgttgctggccattaaacatagcagctgcgtcatatacctcgactttgggagccgtacaaactgtgccaactgccgaacgtgcctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTTGCTCAGGCCGCGCCTCGTTGCTGCGGCCAGCGTGCCCCGGCCTAGGCCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP01749
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462866|gb|BP090779.1|BP090779
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|49467463|gb|BP095376.1|BP095376
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|22076504|gb|BQ825280.1|BQ825280
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|16435384|gb|BM000604.1|BM000604
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|49462991|gb|BP090904.1|BP090904
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|22073581|gb|BQ822919.1|BQ822919
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|22074809|gb|BQ823607.1|BQ823607
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|49470042|gb|BP097903.1|BP097903
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|22068121|gb|BQ818071.1|BQ818071
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|22064815|gb|BQ816030.1|BQ816030
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT
EST: gi|15699977|gb|BI724282.1|BI724282
EST:     CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCG                         GCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTNNGCCGTCGACTT
genomic: CCATATCGCAATGCTCGCATCCTCCAAATTGGCTGCGGCGGTGCCGATCGgtgagcgtcg ... cctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcgactttgggagccgtacaaactgtgccaactgccgaacgtgcctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTTGCTCAGGCCGCGCCTCGTTGCTGCGGCCAGCGTGCCCCGGCCTAGGCCT
                                            gcctcac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggcgtggtgttgctggccattaaacatagcagctgcgtcatatacctcgactttgggagccgtacaaactgtgccaactgccgaacgtgcctcacgtagGCACCAGCGCTCGCACCTCAGCCGCCCTGCCAGCCCCTCTGCCGTCGACTTGCTCAGGCCGCGCCTCGTTGCTGCGGCCAGCGTGCCCCGGCCTAGGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - -tggtgtt
- - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - atatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaact