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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgcatgcatgtaccaatcatcacttgcgcgaaacggaaattaggcgccctgaccgggtctgcttctgtcgcgctcgatggtcggttgcgcaactgactgaccatgtccgcttttgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01724
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7593535|gb|AW707786.1|AW707786
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7616319|gb|AW721759.1|AW721759
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|49470868|gb|BP098729.1|BP098729
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7427096|gb|AW661269.1|AW661269
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7615707|gb|AW721147.1|AW721147
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|49469711|gb|BP097572.1|BP097572
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7426881|gb|AW661054.1|AW661054
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCC-AGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7413233|gb|AW651987.1|AW651987
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7427390|gb|AW661556.1|AW661556
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7616236|gb|AW721676.1|AW721676
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
EST: gi|7426808|gb|AW660981.1|AW660981
EST:     AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG                         GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgtaaatgcat ... tgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgctcgatggtcggttgcgcaactgactgaccatgtccgcttttgccgcgcagGCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG
                          gactgac  putative branch site (score: 2)
                                     tccgctttt  putative PPT