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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatctcatgctgatattttcctaccgctgtaaacattgagttttggcaacaatgcagcgaacgcggtcctgcttgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576473|gb|BE129014.1|BE129014
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGNCACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|10127075|gb|BE725779.1|BE725779
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|15367917|gb|BI527343.1|BI527343
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|10778258|gb|AV634938.1|AV634938
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|23363493|gb|BU651313.1|BU651313
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|9210580|gb|BE337495.1|BE337495
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|10770885|gb|AV621708.1|AV621708
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|10782350|gb|AV639030.1|AV639030
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCT-GCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGC
EST: gi|10790358|gb|AV627724.1|AV627724
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|10125696|gb|BE724400.1|BE724400
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|15373603|gb|BI533029.1|BI533029
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCTGAG                         GCGCTCACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCTGAG                         GCGCTCACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
EST: gi|15910544|gb|BI816399.1|BI816399
EST:     GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAG                         GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC
genomic: GCTTCCCTCGCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGgtgaatctca ... tgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaacattgagttttggcaacaatgcagcgaacgcggtcctgcttgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA
                                      tcctgctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaatctcatgctgatattttcctaccgctgtaaacattgagttttggcaacaatgcagcgaacgcggtcctgcttgctgcgcagGCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG