1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaattatgcgtcatgaaatgcacgttgatgcgacgagcccaacgccggggacctgcaactcacccaagttctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTCTTCGCACCAGCAACTGTCAACAAGGAGTTTGAGATCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP01577 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTCEST: gi|15697211|gb|BI721516.1|BI721516
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
EST: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTCEST: gi|161793423|gb|FC077295.1|FC077295
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
EST: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
tgatgcgacgagcccaacgccggggacctgcaactcacccaagttctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTCTTCGCACCAGCAACTGTCAACAAGGAGTTTGAGATCGAG
aactcac putative branch site (score: 2)
ttctctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattatgcgtcatgaaatgcacgttgatgcgacgagcccaacgccggggacctgcaactcacccaagttctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTCTTCGCACCAGCAACTGTCAACAAGGAGTTTGAGATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC