1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctttcggcgtctcggcttggacgtgggtagggttgtggtgcgccacgtcgggcgcaaggcctcgtccgctccacctcgagctccgtacccctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCCCGCCACTGACCCCGTGGTGCTGTGGATGACGG
species | Chlamydomonas reinhardtii |
transcript | EDP01561 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAG GACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCCEST: gi|10790196|gb|AV627562.1|AV627562
genomic: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAGgtgagaggcc ... ctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCC
EST: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAG GACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCCEST: gi|10786088|gb|AV642760.1|AV642760
genomic: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAGgtgagaggcc ... ctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCC
EST: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAG GACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCC
genomic: CCACTCATCGACCCGCCCAAGCGGATTGCGGGCTACTTCAAGCTCAACAGgtgagaggcc ... ctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCC
cgtcgggcgcaaggcctcgtccgctccacctcgagctccgtacccctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCCCGCCACTGACCCCGTGGTGCTGTGGATGACGG
tacccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcggcgtctcggcttggacgtgggtagggttgtggtgcgccacgtcgggcgcaaggcctcgtccgctccacctcgagctccgtacccctggctgcagGACGCACGATGCCCGCATGTTCTACTTCTACTTCCAGTCGCGTCACAATCCCGCCACTGACCCCGTGGTGCTGTGGATGACGG
- - - - - - - - - - - - - - - - ttgtggt